I also want to add two tiny issues I found (though my playthrough is modded to hell and back, so IDK what causes it).
First, I have an issue where on the first phase of BoS. When the player awakens on the Orion, the standard KotOR opening crawl plays beforehand and the cutscene with the Rodian doesn't trigger properly (can be triggered manually), and the opening crawl also plays when returning to the larger section (forgot what it's called, the one where the bridge and the crew quaters are located).
Second, the dancer sidequest where Shadow acts the part of a dancer for the Czerka Leisure Officer has an issue where the dialogue with the bounty hunter Roosh vanishes and freezes before the final confrontation with him - basically making it so that you're stuck in the dialogue with no way to advance.
I suspect that it's caused by another mod, though, possibly K1CP, but it's still something I thought I'd mention for the purpose of compability.