My suggestion would be to have bastila's lightsaber deactivate after she intially runes in.There's a script function to deactivate lightsaber, I can't recall what it is exactly but I was able to tinker with it at one time.
Otherwise, you have the lightsaber clipping into her, not to mention that last moment when she uses the begging animation and the lightsaber goes through her.
Tbh, I really enjoyed the original video, but this one was well done.