I thought I'd make a thread where people can post the non game-breaking bugs they find, as it's easier than having to make a new thread each time.
So far I've found that:
The bao dur/atton fight on nar shadaa fight is still glitched. It still skips through the part where you choose the third character to accompany them.
The telos fuel quest is still broken. I spoke to gren, but when I got back to goto the dialogue didn't change to reflect that I had already given them vogga's fuel.
And sometimes the scripts for the khoonda fight don't trigger properly. For example, I killed Azkul, but I can't talk to vrook.