I got the scene of Visas, Mira, Atton and Brianna confronting Kreia in Trayus Core, and Atton ran away and beat Sion. When I entered the academy I got the full speech about the choice, not just the vanilla game's first line, but when I got to the prison area there were only corpses in the cells and empty cages in the last room. I thought maybe because I was neutral in terms of LS/DS I didn't have the chance to save them and that line about the choice just triggers anyway but Kreia spoke of the companions as if they had lived. After defeating Kreia, Atton was there.
Secondarily, I never had a chance to resolve the Fuel Sabotage mission: the TSF station was already secured by Onderon soldiers when I got to the other side of the station in the battle on Citadel Station and the only place I had to go was on the shuttle to the Ravager. I never saw Bao-dur again besides his holograms for his remote.
Are these bugs or did I just miss something? I upgraded to the latest version from 1.8.1 either at the end of Peragus or right after arriving on Telos but I thought I saw one of the RCM's authors tell someone on moddb that that should be fine.
North American 4-cd version; patched the game before applying a previous 1.8 version of the RCM; no I haven't tried starting a new game, it would take me weeks to get back to the endgame and if I just warped there via the console I wouldn't know what other variables weren't set up right so it wouldn't be a good test case; Windows 7; I removed the RCM logo from the override because I didn't want it but I was able to see it before I did that.
I've got Darker Peragus, that Anakin head, some reskinned armors and foliage, and the latest M4-78 but no mods other than RCM that should affect like scripts or sequences of events and nothing that affects Malachor or the endgame at all.