So, what line of appearance.2da messes it up? I can't find one that seems to be related to them.
EDIT: I have moved my appearance.2da file in override and it doesn't do anything. I'll try reinstalling all my mods, I guess.
I have the same problem, what line of appearance.2da affects that? And I can see the handsisters in the cutscene with the unconscious Bao-Dur, but they aren't in the Academy.